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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29641117_29659198_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29641117 - 29659198
Intron Length:
18082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TAACCTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATGTTTTTAACC
Flanking Amino Acid:
RKEFIIFNREKLRRQQDQSG
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
61.1
0.25
1.1
57.8
42.6
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
74.5
0.75
1.1
75.87
34.6

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730