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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29660166_29664511_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29660166 - 29664511
Intron Length:
4346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
CCTTTTGTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TAACTTTGAATC
Flanking Amino Acid:
KSVTPGFVPNKGRLNCDPTF
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.3
75
38.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
75.7
0.58
1
69.4
40.5
Minor 5ss
40.9
-1
2.8
48.4
41.2
Minor BPS
51.5
0.03
1.3
58.45
33.8

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730