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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29665860_29670213_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29665860 - 29670213
Intron Length:
4354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AACTTTATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATTGCTTTAACT
Flanking Amino Acid:
ITAYELLRGWRPYEIHSATP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
71.5
0.49
0.9
62.7
42.2
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
79.6
1.01
1.2
90.07
34.1

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730