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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29670318_29684734_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29670318 - 29684734
Intron Length:
14417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTGTTTGATC
Flanking Amino Acid:
SSMAGTKPYMAPEVFQAFMD
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82.5
0.73
0.8
81.3
36.3
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
64.1
0.43
1.7
76.89
33.8

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730