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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29719442_29774126_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29719442 - 29774126
Intron Length:
54685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TCTGCTGTAACT
Flanking Amino Acid:
GLEHPFLVNLWYSFQDEEDM
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
68.7
0.46
1
71.3
34
Major PPT
84.2
0.77
0.7
76.2
32.4
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
58
0.33
2.1
78.9
44

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730