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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29774279_29783192_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29774279 - 29783192
Intron Length:
8914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTGCTGTCAATT
Flanking Amino Acid:
RAIGKGSFGKVCIVQKRDTK
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
60.8
0.24
1
60
40.7
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
47.2
-0.1
2.2
68.93
42.5

Associated Gene:

Gene:
STK32B
Ensembl Gene ID:
ENSAPLG00000004217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004327
29639919 - 29813648
173730