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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29838692_29838798_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29838692 - 29838798
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CAAAACAGAATT
Flanking Amino Acid:
FKALQTSKDVDPCVETLPRL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
42.1
-0.5
1.8
54.29
40.4

Associated Gene:

Gene:
CYTL1
Ensembl Gene ID:
ENSAPLG00000004125
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004223
29823842 - 29841107
17266