About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29838844_29840187_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29838844 - 29840187
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTCTTCTGCATG
Flanking Amino Acid:
TLPRLYLDIHNYCVLTKLRD
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
75.5
0.57
1
68.7
41.8
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
48.5
-0.2
2
59.15
43.4

Associated Gene:

Gene:
CYTL1
Ensembl Gene ID:
ENSAPLG00000004125
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004223
29823842 - 29841107
17266