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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29840317_29840476_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29840317 - 29840476
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATGA
Flanking Amino Acid:
YTIMISYCRRDLVFLTDDCN
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
62.8
0.4
1.9
74.85
43.1

Associated Gene:

Gene:
CYTL1
Ensembl Gene ID:
ENSAPLG00000004125
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004223
29823842 - 29841107
17266