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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29920256_29920374_R

Intron Information:

Intron Rank:
137023
Intron Class:
major
Intron Phase:
Intron Coordinates:
29920256 - 29920374
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGGTTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
69
0.43
1
68.1
42.2
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
49.1
0.01
1.8
67.89
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021219
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039022
29919380 - 29921306
1927
ENSAPLT00000036501
29919380 - 29921306
1927