About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_29924507_29926085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29924507 - 29926085
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GCTGTCGGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
CTCTCCTTCCCT
Flanking Amino Acid:
QSPRFSPPPPRRLSPPACTL
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
60
0.22
1.1
53.3
41.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
44.2
-0.3
3.7
75.03
47.8

Associated Gene:

Gene:
MSX1
Ensembl Gene ID:
ENSAPLG00000018673
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027275
29923505 - 29926717
3213