About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30022620_30026437_F

Intron Information:

Intron Rank:
150439
Intron Class:
major
Intron Phase:
Intron Coordinates:
30022620 - 30026437
Intron Length:
3818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCTATTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTTTTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.1
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75
0.56
1
70.3
40.3
Minor 5ss
44.8
-0.6
2.9
68.2
42.5
Minor BPS
50.4
0.09
1.8
73.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030857
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036420
30022503 - 30032851
10349