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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30030100_30030587_F

Intron Information:

Intron Rank:
150437
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
30030100 - 30030587
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GTTACTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TAACCTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.3
37
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.9
0.76
0.8
80.9
36.6
Minor 5ss
55.8
0.2
2.7
75.2
35.4
Minor BPS
64.2
0.44
1.4
68.7
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030857
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022465
30030000 - 30032851
2852