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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30095990_30128566_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30095990 - 30128566
Intron Length:
32577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGGCGTTTAATA
Flanking Amino Acid:
SDFTGRAREVISNIGKLKDF
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.8
0.8
0.6
84.8
22.8
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
52
0.06
1.8
61.02
39.6

Associated Gene:

Gene:
STX18
Ensembl Gene ID:
ENSAPLG00000003942
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018341
30095828 - 30159572
63745
ENSAPLT00000004053
30095828 - 30159417
63590