About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30128635_30139618_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30128635 - 30139618
Intron Length:
10984

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GATTTCTTAAAA
Flanking Amino Acid:
QHRKDYINAYSHIMSEYVRM
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
89.3
28.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.2
0.7
0.8
80.5
31.5
Minor 5ss
26
-2.8
4.1
39.6
46.4
Minor BPS
71.3
0.66
1.3
74.68
36

Associated Gene:

Gene:
STX18
Ensembl Gene ID:
ENSAPLG00000003942
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018341
30095828 - 30159572
63745
ENSAPLT00000004053
30095828 - 30159417
63590