About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30141378_30145007_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30141378 - 30145007
Intron Length:
3630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTATGCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATCAGTTAAAT
Flanking Amino Acid:
RVKRVIDKKRLSRLEPEQSN
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.8
0.56
0.9
66
40.8
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
48.7
-0
2.3
73.52
42.3

Associated Gene:

Gene:
STX18
Ensembl Gene ID:
ENSAPLG00000003942
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018341
30095828 - 30159572
63745
ENSAPLT00000004053
30095828 - 30159417
63590