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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30162415_30167739_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30162415 - 30167739
Intron Length:
5325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GTATCTGTAATC
Flanking Amino Acid:
HTCPEGFVFKNNQCIPAGLE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
56
0.17
2
67.59
38.4

Associated Gene:

Gene:
NSG1
Ensembl Gene ID:
ENSAPLG00000017448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020901
30162214 - 30182084
19871