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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30167851_30178520_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30167851 - 30178520
Intron Length:
10670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GCATTACTAACA
Flanking Amino Acid:
ITEGVSERFKVTVLVLFALA
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
47.8
-0.1
1.9
58.78
40.3

Associated Gene:

Gene:
NSG1
Ensembl Gene ID:
ENSAPLG00000017448
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020901
30162214 - 30182084
19871