About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30208229_30208882_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30208229 - 30208882
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATACAGTAATT
Flanking Amino Acid:
KPYICEICGKRFAASGDVQR
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.3
0.66
1
72.4
42.2
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
47.7
-0
2.2
69.83
40.8

Associated Gene:

Gene:
ZBTB49
Ensembl Gene ID:
ENSAPLG00000003489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003571
30205254 - 30222005
16752
ENSAPLT00000040294
30205254 - 30223132
17879