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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30219694_30221831_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30219694 - 30221831
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGCCTTATTT
Flanking Amino Acid:
NVLAAFSQYFRTLFQNSSGQ
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.9
81.5
34.7
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
71
0.74
1.7
87.57
38.6

Associated Gene:

Gene:
ZBTB49
Ensembl Gene ID:
ENSAPLG00000003489
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003571
30205254 - 30222005
16752