Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30223588_30223837_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

30223588 - 30223837

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCAGC

5'SS Class:

major

3'SS Sequence:

TTTGTCTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

GTTGTAAAAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

63.1

43.4

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

80.2

0.68

0.8

73.6

Minor 5ss

32.9

-2

3.1

42.5

44.6

Minor BPS

42.5

-0.5

2.1

57.68

41.6

Associated Gene:

Gene:

LYAR

Ensembl Gene ID:

ENSAPLG00000003243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034608

30223580 - 30230614

7035