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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30225542_30227026_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30225542 - 30227026
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTTTCTTCATT
Flanking Amino Acid:
GDAKQQEWIQKIHEVVKKPN
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.5
0.82
0.8
85.6
27.8
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
LYAR
Ensembl Gene ID:
ENSAPLG00000003243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044882
30223838 - 30234344
10507
ENSAPLT00000034608
30223580 - 30230614
7035
ENSAPLT00000003315
30223838 - 30239854
16017