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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30229039_30229315_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30229039 - 30229315
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCACCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTCAATT
Flanking Amino Acid:
RKKRKHKHAEEEPHITKKRM
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
68.8
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.8
71.6
34.5
Minor 5ss
69.5
0.66
1.9
77.9
36.8
Minor BPS
57.7
0.32
1.7
78.82
37.3

Associated Gene:

Gene:
LYAR
Ensembl Gene ID:
ENSAPLG00000003243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044882
30223838 - 30234344
10507
ENSAPLT00000034608
30223580 - 30230614
7035
ENSAPLT00000003315
30223838 - 30239854
16017