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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30230844_30233524_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30230844 - 30233524
Intron Length:
2681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCATCTTATTC
Flanking Amino Acid:
KVLKDKVKLLKARQIKLPVN
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80.5
0.69
0.9
75.6
32.9
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
51.1
0.02
1.6
59.05
40.4

Associated Gene:

Gene:
LYAR
Ensembl Gene ID:
ENSAPLG00000003243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044882
30223838 - 30234344
10507