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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30230844_30239763_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30230844 - 30239763
Intron Length:
8920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TATTCTTTAACA
Flanking Amino Acid:
KVLKDKVKLLKLITSESEKL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.2
0.7
0.9
77.5
35.2
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
87
1.16
0.9
88.63
27.7

Associated Gene:

Gene:
LYAR
Ensembl Gene ID:
ENSAPLG00000003243
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003315
30223838 - 30239854
16017