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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30245848_30246985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30245848 - 30246985
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATCTAAAGC
Flanking Amino Acid:
STATFIAAAICFNVALWPVW
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
53.7
0.1
2
70.24
41.4

Associated Gene:

Gene:
TMEM128
Ensembl Gene ID:
ENSAPLG00000023798
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048489
30242895 - 30249223
6329