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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30247095_30248528_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
30247095 - 30248528
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATGATG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
55.1
0.01
1.6
66.28
35.9

Associated Gene:

Gene:
TMEM128
Ensembl Gene ID:
ENSAPLG00000023798
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048489
30242895 - 30249223
6329