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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30252331_30255954_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30252331 - 30255954
Intron Length:
3624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTCTAATA
Flanking Amino Acid:
DTHAGARWLKCGITLFAVIT
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.4
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
81.9
28.7
Minor 5ss
40.4
-1.1
2.8
53.8
42.8
Minor BPS
60.7
0.33
1.6
72.09
33.9

Associated Gene:

Gene:
OTOP1
Ensembl Gene ID:
ENSAPLG00000003029
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003065
30251979 - 30265400
13422