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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30259515_30261501_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30259515 - 30261501
Intron Length:
1987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
ATTACCTTATTT
Flanking Amino Acid:
DIIQSFKTLERFGVIHSVFT
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
81.2
0.7
0.8
76.5
31.7
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
68.3
0.65
1.6
83.3
37.8

Associated Gene:

Gene:
OTOP1
Ensembl Gene ID:
ENSAPLG00000003029
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003065
30251979 - 30265400
13422