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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30264866_30265229_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30264866 - 30265229
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAATA
Flanking Amino Acid:
AAFLFLCNLSLWIPPAFGCR
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72
39.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
34.1
-1.8
3.3
49.3
46.4
Minor BPS
58.4
0.26
2
73.44
38.4

Associated Gene:

Gene:
OTOP1
Ensembl Gene ID:
ENSAPLG00000003029
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003065
30251979 - 30265400
13422