About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30317990_30334842_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30317990 - 30334842
Intron Length:
16853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCAGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
TTTCTGTTCACA
Flanking Amino Acid:
AVGLLFPFIQSGLQTYCFLV
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
60.1
44.8
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
84.4
0.77
0.8
79.4
32.6
Minor 5ss
38.7
-1.3
3.1
52.7
44
Minor BPS
49.1
-0
2.4
72.02
40.3

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025014
30315565 - 30419024
103460
ENSAPLT00000024639
30315565 - 30440144
124580
ENSAPLT00000001361
30315565 - 30442111
126547