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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30356956_30366977_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30356956 - 30366977
Intron Length:
10022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTGTCTGATGC
Flanking Amino Acid:
AVETLAAVFSGLVIERLGRR
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
44.4
-0.4
2
56.76
42.1

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025014
30315565 - 30419024
103460
ENSAPLT00000024639
30315565 - 30440144
124580
ENSAPLT00000001361
30315565 - 30442111
126547