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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30400975_30407773_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30400975 - 30407773
Intron Length:
6799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
CCTACATAAAGT
Flanking Amino Acid:
IVTPIVKFFGRKCTLLLNNV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
81.8
31.8
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
83.1
0.74
0.7
81.3
23.7
Minor 5ss
36.7
-1.5
3.3
49.9
46.4
Minor BPS
44.2
-0.3
2.2
61.22
48.2

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001361
30315565 - 30442111
126547
ENSAPLT00000025014
30315565 - 30419024
103460
ENSAPLT00000024639
30315565 - 30440144
124580