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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30407935_30414656_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30407935 - 30414656
Intron Length:
6722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGGTTTTTACAT
Flanking Amino Acid:
NLSVVNAPAVYIKKFYNETW
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
52.1
0.14
1.7
68.97
42.3

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025014
30315565 - 30419024
103460
ENSAPLT00000024639
30315565 - 30440144
124580
ENSAPLT00000001361
30315565 - 30442111
126547