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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30414756_30418081_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30414756 - 30418081
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATACTAACA
Flanking Amino Acid:
GKGPRRAGKGNWSGSLIVAS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.4
67.1
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
37
-1.5
2.7
41.4
38.2
Minor BPS
49.2
-0
1.9
66.99
38.6

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025014
30315565 - 30419024
103460