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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30440145_30442038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
30440145 - 30442038
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GATTTCTTAGGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
56
0.27
1.9
73.59
43.1

Associated Gene:

Gene:
SLC2A9
Ensembl Gene ID:
ENSAPLG00000001225
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001361
30315565 - 30442111
126547