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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30469312_30471538_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30469312 - 30471538
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCCTCTTCCATT
Flanking Amino Acid:
KIPDAHRLHHNIGLPRSWSM
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
1
72.2
42.7
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
46.3
-0.2
1.9
59.97
44.4

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027319
30469191 - 30490303
21113