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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30473884_30475336_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30473884 - 30475336
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
GYTVVLCIGQIVLMKDKKKC
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.7
88.4
27.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037423
30462868 - 30490109
27242
ENSAPLT00000029506
30470901 - 30490303
19403
ENSAPLT00000027319
30469191 - 30490303
21113
ENSAPLT00000016892
30469191 - 30490109
20919