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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30478857_30479583_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30478857 - 30479583
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGTGATACCT
Flanking Amino Acid:
RFATASADGQIFIYDGKTGE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
68.6
0.42
1.1
71.6
38.5
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
43.7
-0.3
2.5
71.76
45.4

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027319
30469191 - 30490303
21113
ENSAPLT00000016892
30469191 - 30490109
20919
ENSAPLT00000037423
30462868 - 30490109
27242
ENSAPLT00000029506
30470901 - 30490303
19403