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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30481675_30483119_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30481675 - 30483119
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
ACTTCTCTAACT
Flanking Amino Acid:
RIAVVGEGREKFGAVFLWDS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
68.7
0.42
0.9
63.5
37.2
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
68.3
0.65
1.6
82.92
38.3

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037423
30462868 - 30490109
27242
ENSAPLT00000029506
30470901 - 30490303
19403
ENSAPLT00000027319
30469191 - 30490303
21113
ENSAPLT00000016892
30469191 - 30490109
20919