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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30483268_30486178_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30483268 - 30486178
Intron Length:
2911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCTGCTTTATT
Flanking Amino Acid:
APSGFYIASGDVSGKLRIWD
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77
0.61
1
74.2
40.1
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
58.1
0.34
2.1
79.57
42.9

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037423
30462868 - 30490109
27242
ENSAPLT00000029506
30470901 - 30490303
19403
ENSAPLT00000027319
30469191 - 30490303
21113
ENSAPLT00000016892
30469191 - 30490109
20919