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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30486270_30489822_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30486270 - 30489822
Intron Length:
3553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAACGTAT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTCCTTTTAATT
Flanking Amino Acid:
GKCVVIRNADNPAIADIYTE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
68.6
38.7
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
72.6
0.51
0.9
74.4
34.1
Minor 5ss
46.4
-0.4
3.3
68.4
42.9
Minor BPS
70.4
0.72
1.2
80.3
36.2

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037423
30462868 - 30490109
27242
ENSAPLT00000029506
30470901 - 30490303
19403
ENSAPLT00000027319
30469191 - 30490303
21113
ENSAPLT00000016892
30469191 - 30490109
20919