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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30490135_30490223_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30490135 - 30490223
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CCTTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAG
U12 Branch Point Sequence:
CCTTCCTTCACA
Flanking Amino Acid:
SGRGAEAAAGGASGRERAKM
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
51.1
0.03
1.6
63
43.2
Major PPT
80.9
0.7
0.7
75.2
26.9
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
68.8
0.59
1.8
74.7
43.3

Associated Gene:

Gene:
WDR1
Ensembl Gene ID:
ENSAPLG00000016176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029506
30470901 - 30490303
19403
ENSAPLT00000027319
30469191 - 30490303
21113