About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30564556_30567800_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30564556 - 30567800
Intron Length:
3245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTGTTCCGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACTGCTATAATA
Flanking Amino Acid:
AEVALLQENTDETFLVRDCS
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
71.9
39.6
Major BPS
80
0.75
1
78.6
31
Major PPT
78.3
0.64
0.9
73
37.5
Minor 5ss
37.9
-1.4
2.7
48.5
40.3
Minor BPS
51.9
0.06
1.7
61.95
39

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589