Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30567879_30568240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30567879 - 30568240

Intron Length:

362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTAAAATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATATCTTAAAAT

Flanking Amino Acid:

MKSLTQPIEKDLNKYEWYIG

Intron Amino Acid Position:

313

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

81.1

32.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.23

1.2

62.6

41.4

Minor 5ss

33.3

-1.9

3.3

47.8

47.9

Minor BPS

59.7

0.38

1.7

76.48

39.9

Associated Gene:

Gene:

CLNK

Ensembl Gene ID:

ENSAPLG00000030089

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024489

30561586 - 30611174

49589