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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30572353_30573561_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30572353 - 30573561
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTTCTGACGT
Flanking Amino Acid:
QNKIKHLPESSFQYIQSSKD
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.2
0.59
0.8
69.4
36.9
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
54.3
0.21
2
80.07
42.1

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589