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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30573638_30574719_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30573638 - 30574719
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATA
Flanking Amino Acid:
ELNEASGREKVTDLMKKLEL
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.8
78.5
33.7
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
74.3
0.76
1.5
84.09
29.2

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589