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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30577512_30580576_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30577512 - 30580576
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTA
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATATAATT
Flanking Amino Acid:
HTFPISAKLTRHISLRELNE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
100
1.24
0.5
100
0
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
33.3
-1.9
3.6
47.7
47.8
Minor BPS
56.4
0.28
1.8
79.51
36.2

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589