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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30581796_30584262_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30581796 - 30584262
Intron Length:
2467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
TAACTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATATTATTAACT
Flanking Amino Acid:
LEGRSMVTIRGERGKIHGPQ
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76
0.59
0.8
74.3
35.9
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
70.6
0.73
1.5
84.49
35.3

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589