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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_30584309_30584614_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30584309 - 30584614
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTAACA
Flanking Amino Acid:
HPSQSPQYLAKCTSALEGRS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.7
0.64
1
74.2
39.4
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
72.4
0.7
1.5
81.25
33.5

Associated Gene:

Gene:
CLNK
Ensembl Gene ID:
ENSAPLG00000030089
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024489
30561586 - 30611174
49589